R-Index

A B C D E F G H I J L M N O P Q R S T U V W X Y Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

R

RASTEGDeGenome - Class in bacnet.scripts.genome: List of methods for adding RAST genes to EGD-e annotation
RASTEGDeGenome() - Constructor for class bacnet.scripts.genome.RASTEGDeGenome
RASToverlap - Class in bacnet.scripts.listeriomics.nterm: Methods to look at overlapping elements between NCBI and RAST genomes
RASToverlap() - Constructor for class bacnet.scripts.listeriomics.nterm.RASToverlap
RATIO_ANNOT_ELEMENT_SEPARATION - Static variable in class bacnet.genomeBrowser.tracksGUI.TrackCanvasGenome
RAWARRAY_COLUMN - Static variable in class bacnet.datamodel.proteomics.NTermCreateData: List of column names when PATHARRYA contains only one experiment
RAWARRAY_MULTICOLUMN - Static variable in class bacnet.datamodel.proteomics.NTermCreateData: List of column names when PATHARRYA contains multiple experiments
read() - Method in class bacnet.datamodel.dataset.ExpressionData: Load the entire TranscriptomeData
read() - Method in class bacnet.datamodel.dataset.NGS: Load the entire TranscriptomeData
read() - Method in class org.biojava3.core.sequence.io.BufferedReaderBytesRead: Reads a single character.
read() - Method in class org.biojava3.core.util.UncompressInputStream
read(byte[], int, int) - Method in class org.biojava3.core.util.UncompressInputStream
read(char[], int, int) - Method in class org.biojava3.core.sequence.io.BufferedReaderBytesRead: Reads characters into a portion of an array.
read(int) - Method in class bacnet.datamodel.dataset.ExpressionData: Read only one position in the data
read(int, boolean) - Method in class bacnet.datamodel.dataset.ExpressionData: Read only one position in the data
read(int, int) - Method in class bacnet.datamodel.dataset.ExpressionData: Read the TranscriptomeData between begin and end
Careful: begin < end
It is a streaming reading so it check if the data are already read or not and act consequently
read(File) - Static method in class bacnet.reader.TabDelimitedTableReader: Read file with a tab separator
read(File, String) - Static method in class bacnet.reader.TabDelimitedTableReader: Read a Tab-delimited file The number of cell in each column has not to be the same When a blank cell is found, it is replace by a void space.
read(String) - Static method in class bacnet.reader.ExpressionMatrixReader
read(String) - Static method in class bacnet.reader.TabDelimitedTableReader
read(String) - Static method in class org.biojava3.genome.parsers.gff.GeneIDGFF2Reader: Read a file into a FeatureList.
read(String) - Static method in class org.biojava3.genome.parsers.gff.GeneMarkGTFReader: Read a file into a FeatureList.
read(String) - Static method in class org.biojava3.genome.parsers.gff.GFF3Reader: Read a file into a FeatureList.
readAllBacteriaPhylogeny() - Static method in class bacnet.scripts.phylogeny.PhylogenyTools: Read PhyloXML file containing all bacteria phylogeny
read from ALLBACTERIA_XML
readAllBacteriaPhylogeny() - Static method in class bacnet.scripts.phylogeny.PhylogenyToolsJolley: Read Newick file containing all bacteria phylogeny
readAllBacteriarLMSTPhylogeny() - Static method in class bacnet.scripts.phylogeny.PhylogenyTools: Read PhyloXML file containing all bacteria phylogeny
Read from ALLBACTERIA_XML_2
readFastaDNASequence(File) - Static method in class org.biojava3.core.sequence.io.FastaReaderHelper
readFastaDNASequence(File, boolean) - Static method in class org.biojava3.core.sequence.io.FastaReaderHelper: Selecting lazySequenceLoad=true will parse the FASTA file and figure out the accessionid and offsets and return sequence objects that can in the future read the sequence from the disk.
readFastaDNASequence(InputStream) - Static method in class org.biojava3.core.sequence.io.FastaReaderHelper: Read a fasta DNA sequence
readFastaProteinSequence(File) - Static method in class org.biojava3.core.sequence.io.FastaReaderHelper: Read a fasta file containing amino acids with setup that would handle most cases.
readFastaProteinSequence(InputStream) - Static method in class org.biojava3.core.sequence.io.FastaReaderHelper: Read a fasta file containing amino acids with setup that would handle most cases.
readFilter(String) - Static method in class bacnet.datamodel.proteomics.NTermFilter: Create a list of cutoff to apply to the list of Nterm
readFirmicutesPhylogeny() - Static method in class bacnet.scripts.phylogeny.PhylogenyToolsJolley: Read Newick file containing all bacteria phylogeny
Remove all non firmicutes species
Remove bacteria for which no complete genome is available : no NP_ or CP id
readFromFileList(String) - Static method in class bacnet.datamodel.dataset.ExpressionMatrix
readHashMap(String) - Static method in class bacnet.reader.TabDelimitedTableReader: Read a tabdelimited table and extract the line as an HashMap<first column, second column> of Strings
readLine() - Method in class org.biojava3.core.sequence.io.BufferedReaderBytesRead: Reads a line of text.
readList(String) - Static method in class bacnet.reader.TabDelimitedTableReader: Read a tabdelimited table and extract the first column as an ArrayList of String
readList(String, boolean) - Static method in class bacnet.reader.TabDelimitedTableReader: Read a tabdelimited table and extract the line as an ArrayList of String
readList(String, boolean, boolean) - Static method in class bacnet.reader.TabDelimitedTableReader: Read a tabdelimited table and extract the line as an ArrayList of String[]
Mainly used to load String[][] in SWT table graphic viewer
readList(String, int) - Static method in class bacnet.reader.TabDelimitedTableReader: Read a tabdelimited table and extract the line as an ArrayList of String
readListDatabases() - Method in class bacnet.Database: Print out JVM properties And set this.path depending on the Operating System HAS TO BE RUN AT STARTING OF EVERY PROJECT
readPhylogeny(String) - Static method in class bacnet.scripts.phylogeny.PhylogenyToolsJolley: Read Newick file containing all bacteria phylogeny
readText(String) - Static method in class bacnet.utils.FileUtils: Load text from fileName
readWIGChromo(String, String, Genome) - Method in class bacnet.datamodel.dataset.NGS: Will read your wig file and parse it to BACNET
ONLY WIG FILE WITH variableStep and raw format are accepted No fixedStep format
ready() - Method in class org.biojava3.core.sequence.io.BufferedReaderBytesRead: Tells whether this stream is ready to be read.
RED - Static variable in class bacnet.utils.BasicColor
REDDARK_GENE - Static variable in class bacnet.utils.BasicColor: Dark red color used for plus strand genes
REDLIGHT_GENE - Static variable in class bacnet.utils.BasicColor: Light red color used for plus strand genes
REDLIGHT_NUCLEOTIDE - Static variable in class bacnet.utils.BasicColor: red light color for nucleotide representation
REDLINE_GENE - Static variable in class bacnet.utils.BasicColor: Very dark red color used for plus strand genes surrounding
redrawAllCanvas() - Method in class bacnet.genomeBrowser.tracksGUI.TracksComposite
Region - Class in bacnet.genomeBrowser.core
Region() - Constructor for class bacnet.genomeBrowser.core.Region
Region(int, int) - Constructor for class bacnet.genomeBrowser.core.Region
regionChanged - Variable in class bacnet.genomeBrowser.core.Region
registerClosingUIsession(EPartService, EModelService, Shell) - Static method in class bacnet.e4.rap.SessionControl: Register the closing of UI session and close every part manually !
registerClosingUIsession(EPartService, EModelService, Shell) - Static method in class bacnet.e4.rap.setup.SessionControl: Register the closing of UI session and close every part manually !
registerServiceAndNavigationTab(EPartService) - Static method in class bacnet.raprcp.NavigationManagement: Register service navigation management to be able to use Previous and Next buttons
registerTextFile(String, File) - Static method in class bacnet.raprcp.SaveFileUtils: Register a text file in RWT platform
regroupResults(String) - Static method in class bacnet.scripts.genome.SDProfile: Read all text files created during SDProfile calculation and regroup them
RegulatorRegion - Class in bacnet.scripts.listeriomics
RegulatorRegion() - Constructor for class bacnet.scripts.listeriomics.RegulatorRegion
relativeComplement(ArrayList<String>, ArrayList<String>) - Static method in class bacnet.utils.ListUtils: Calculate the relative complement of two lists L1 and L2
relativeTOabsoluteValue() - Method in class bacnet.genomeBrowser.core.DataTrack: Changed all BioCondition to display when switching from "RELATIVE VALUE DISPLAY3 to "ABSOLUTE VALUE DISPLAY"
remainder() - Method in class org.biojava3.genome.parsers.gff.LocIterator: Get portion of bounding location that has not yet been retrieved by next() method.
remove() - Method in class org.biojava3.core.sequence.template.SequenceMixin.SequenceIterator
remove() - Method in class org.biojava3.genome.parsers.gff.LocIterator: Unsupported.
remove(Object) - Method in class org.biojava3.core.util.SoftHashMap
removeAlignedSequence(S) - Method in class org.biojava3.core.sequence.MultipleSequenceAlignment: Remove a sequence
removeCDS(String) - Method in class org.biojava3.core.sequence.TranscriptSequence: Remove a CDS or coding sequence from the transcript sequence
removeColumn(String, String) - Static method in class bacnet.scripts.arrayexpress.ArrayExpress
removeExon(String) - Method in class org.biojava3.core.sequence.GeneSequence: Remove the exon sequence
removeExtension(String) - Static method in class bacnet.utils.FileUtils: Remove extension of a fileName, by removing everything after the last '.'
removeExtensionAndPath(String) - Static method in class bacnet.utils.FileUtils: Remove extension of a filePath and the complete path
removeFeature(FeatureInterface<AbstractSequence<C>, C>) - Method in class org.biojava3.core.sequence.template.AbstractSequence: Remove a feature from the sequence
removeFiles() - Static method in class bacnet.scripts.blast.MultiSequenceTBlastNProtein: Remove specific files in genome folders
removeFiles() - Static method in class bacnet.scripts.blast.PhylogenySmallORFs: Remove specific files in genome folders
removeFiles() - Static method in class bacnet.scripts.phylogeny.PhylogenySmallORFs: Remove specific files in genome folders
removeFiles(String) - Static method in class bacnet.scripts.blast.BlastDatabase: Remove specific files in genome folders
removeGeneSequence(String) - Method in class org.biojava3.core.sequence.ChromosomeSequence
removeIntron(String) - Method in class org.biojava3.core.sequence.GeneSequence: Remove the intron by accession
removeNote(String) - Method in class org.biojava3.core.sequence.template.AbstractSequence
removePath(String) - Static method in class bacnet.utils.FileUtils: Remove extension of a filePath and the complete path
removeTranscript(String) - Method in class org.biojava3.core.sequence.GeneSequence: Remove the transcript sequence from the gene
removeUnusedFile() - Static method in class bacnet.scripts.blast.GenomeNCBIFolderTools: In NCBI genome folder remove everything which is not useful for my analysis
keep fasta file, .ptt .gff and blastDB files
reorderHeaders(ArrayList<String>) - Method in class bacnet.datamodel.dataset.ExpressionMatrix: Giving a list of header we reorganize the ExpressionMatrix
reorderModif(ArrayList<NTerm>, NTerm) - Method in class bacnet.datamodel.dataset.NTermData: Reorder the Nterm to display AcD3 first, then Ace, and For.
reorganizeMatrix(ExpressionMatrix, ArrayList<StatTest>, Comparison) - Static method in class bacnet.scripts.database.ComparisonsCreation: Reorder headers of the comparison Matrix to group GenExpression and Tiling results coming from the same comparison
rescaleData(double[][], double) - Static method in class bacnet.utils.ArrayUtils: Rescale each Column of the array, at the end all the points as to fill in a cube of diameter gridSize
reset() - Method in class bacnet.scripts.core.vennDiagram.CombinationGenerator
reset() - Method in class bacnet.utils.CombinationGenerator
reset() - Method in class org.biojava3.core.sequence.io.BufferedReaderBytesRead: Resets the stream to the most recent mark.
reset() - Method in class org.biojava3.core.util.CRC64Checksum
resolve(T) - Method in interface org.biojava3.core.sequence.location.template.Point.Resolver
ResourceManager - Class in bacnet.swt: Utility class for managing OS resources associated with SWT/JFace controls such as colors, fonts, images, etc. !!!
ResourceManager() - Constructor for class bacnet.swt.ResourceManager
ResourceManager.PluginResourceProvider - Interface in bacnet.swt: Provider for plugin resources, used by WindowBuilder at design time.
reverse(int) - Method in class org.biojava3.core.sequence.location.FuzzyPoint
reverse(int) - Method in class org.biojava3.core.sequence.location.SimplePoint
reverse(int) - Method in interface org.biojava3.core.sequence.location.template.Point: Returns the equivalent position on the reverse strand
REVERSED_ONE - Enum constant in enum org.biojava3.core.sequence.transcription.Frame
REVERSED_THREE - Enum constant in enum org.biojava3.core.sequence.transcription.Frame
REVERSED_TWO - Enum constant in enum org.biojava3.core.sequence.transcription.Frame
ReversedSequenceView<C extends Compound> - Class in org.biojava3.core.sequence.views: For a given sequence this class will return the base at the reversed position i.e. in a sequence of size 10, if you request base 2 you will get back the base at position 9.
ReversedSequenceView(Sequence<C>) - Constructor for class org.biojava3.core.sequence.views.ReversedSequenceView
REXEC - Static variable in class bacnet.scripts.core.Rscript
RFAM_GENOME - Static variable in class bacnet.datamodel.annotation.RfamElement
rFamAnnot - Variable in class bacnet.expressionAtlas.core.SelectGenomeElementDialog
RfamElement - Class in bacnet.datamodel.annotation
RfamElement(FeatureI) - Constructor for class bacnet.datamodel.annotation.RfamElement
RiboSeq - Enum constant in enum bacnet.datamodel.dataset.OmicsData.TypeData
rnaAminoAcidTranslator(RNAToAminoAcidTranslator) - Method in class org.biojava3.core.sequence.transcription.TranscriptionEngine.Builder
RNABindingCircularGenome(int, int, Genome, String) - Method in class bacnet.scripts.genome.CircularGenomeJPanel: Function to create a circular genome view of rnas binding to protein lom2686
rnaCompounds(CompoundSet<NucleotideCompound>) - Method in class org.biojava3.core.sequence.transcription.TranscriptionEngine.Builder
RNACompoundSet - Class in org.biojava3.core.sequence.compound
RNACompoundSet() - Constructor for class org.biojava3.core.sequence.compound.RNACompoundSet
rnaCreator(SequenceCreatorInterface<NucleotideCompound>) - Method in class org.biojava3.core.sequence.transcription.TranscriptionEngine.Builder
RNASeq - Enum constant in enum bacnet.datamodel.dataset.OmicsData.TypeData
RNASEQ_NOSTRAND - Static variable in class bacnet.utils.BasicColor: Color used for RNASEq when there is only one strand available = non directional RNASeq
RNASequence - Class in org.biojava3.core.sequence: RNASequence where RNACompoundSet are the allowed values
RNASequence(String) - Constructor for class org.biojava3.core.sequence.RNASequence: Create a RNA sequence from a String
RNASequence(String, CompoundSet<NucleotideCompound>) - Constructor for class org.biojava3.core.sequence.RNASequence: Create a RNA sequence from a string with a user defined RNA compound set
RNASequence(ProxySequenceReader<NucleotideCompound>) - Constructor for class org.biojava3.core.sequence.RNASequence: Create a RNA aequence from a proxy reader
RNASequence(ProxySequenceReader<NucleotideCompound>, CompoundSet<NucleotideCompound>) - Constructor for class org.biojava3.core.sequence.RNASequence: Create a RNA sequence from a proxy reader and user defined RNA compound set
RNASequenceCreator - Class in org.biojava3.core.sequence.io: Used to create a RNA sequence
RNASequenceCreator(CompoundSet<NucleotideCompound>) - Constructor for class org.biojava3.core.sequence.io.RNASequenceCreator
RnaSequenceView - Class in org.biojava3.core.sequence.views: Attempts to do on the fly translation of RNA by not requesting the compounds until asked.
RnaSequenceView(Sequence<NucleotideCompound>) - Constructor for class org.biojava3.core.sequence.views.RnaSequenceView
RnaSequenceView(Sequence<NucleotideCompound>, CompoundSet<NucleotideCompound>) - Constructor for class org.biojava3.core.sequence.views.RnaSequenceView
RNAToAminoAcidTranslator - Class in org.biojava3.core.sequence.transcription: Takes a Sequence of NucleotideCompound which should represent an RNA sequence (RNASequence is good for this) and returns a list of Sequence which hold AminoAcidCompound.
RNAToAminoAcidTranslator(SequenceCreatorInterface<AminoAcidCompound>, CompoundSet<NucleotideCompound>, CompoundSet<Table.Codon>, CompoundSet<AminoAcidCompound>, Table, boolean, boolean, boolean) - Constructor for class org.biojava3.core.sequence.transcription.RNAToAminoAcidTranslator
ROW - Static variable in class bacnet.raprcp.NavigationManagement
rRNA - Enum constant in enum bacnet.datamodel.sequence.NcRNA.TypeNcRNA
Rscript - Class in bacnet.scripts.core
Rscript() - Constructor for class bacnet.scripts.core.Rscript
run() - Static method in class bacnet.genomeBrowser.TestGenomeBrowser
run() - Static method in class bacnet.scripts.arrayexpress.ArrayExpress
run() - Static method in class bacnet.scripts.arrayexpress.ArrayExpressDataImport: Download every related experiment from ArrayExpress
run() - Static method in class bacnet.scripts.arrayexpress.ArrayExpressTechnology: Main method, where all other methods are ran
run() - Static method in class bacnet.scripts.blast.PhylogenySmallORFs
run() - Static method in class bacnet.scripts.genome.RASTEGDeGenome
run() - Static method in class bacnet.scripts.genome.SDProfile
run() - Static method in class bacnet.scripts.genome.StartCodonProfile
run() - Static method in class bacnet.scripts.listeriomics.ArrayExpress.ArrayExpressListeriomics
run() - Static method in class bacnet.scripts.listeriomics.ArrayExpress.ArrayExpressTechnology: Main method, where all other methods are ran
run() - Static method in class bacnet.scripts.listeriomics.ArrayExpressListeriomics
run() - Static method in class bacnet.scripts.listeriomics.GenomesListeriomics
run() - Static method in class bacnet.scripts.listeriomics.MainListeriomics: This method in an example of all methods which should be run to create your multi-omics website
It is never run !
run() - Static method in class bacnet.scripts.listeriomics.nterm.NTermConservationWithRiboProfiling
run() - Static method in class bacnet.scripts.listeriomics.nterm.NTermMain: General method for running all methods related to NTerm project
run() - Static method in class bacnet.scripts.listeriomics.Peptidomics
run() - Static method in class bacnet.scripts.listeriomics.PhylogenyListeriomics
run() - Static method in class bacnet.scripts.listeriomics.RegulatorRegion
run() - Static method in class bacnet.scripts.listeriomics.srna.SmallPeptidesSearch: Deprecated.

List of methods to search for small unannotated peptides in reference genomes
If the peptide is not found we will try to find its surrounding genes in other strains and look at thze intergenic region to find the peptide.
run() - Static method in class bacnet.scripts.listeriomics.srna.SrnaAlignmentBlastN
run() - Static method in class bacnet.scripts.listeriomics.SrnaListeriomics
run() - Static method in class bacnet.scripts.listeriomics.SummaryListeriomics
run() - Static method in class bacnet.scripts.listeriomics.SystemsBiologyListeriomics: Create the co-expression network
run() - Static method in class bacnet.scripts.listeriomics.TilingGeneExprDataBase: This fundamental method create all the files necessary to make Listeriomics software and website work!
run() - Static method in class bacnet.scripts.listeriomics.TSSNTermRiboSeqListeriomics: Run createListeriomicsTSSTermSeq() to construct wig files from tab-delimited files
run(double[], double[]) - Method in class bacnet.scripts.core.stat.StatTest
run(GenomeNCBI, String, String) - Static method in class bacnet.datamodel.sequenceNCBI.GenomeConversion: Method for Genome already load

Convert a GenomeNCBI into a Genome object -> convert each ChromosomeBacteriaSequence into Chromosome:
each chromosome sequence are the same coding and noncoding DNASequence are convert into Gene and NcRNA and serialized sRNA are leaved unchanged Operons, terminator and other elements are serialized Annotation is created, saved in a table (only for verification) and serialized
run(GenomeNCBI, String, String, String) - Static method in class bacnet.datamodel.sequenceNCBI.GenomeConversion: Method for Genome already load

Convert a GenomeNCBI into a Genome object -> convert each ChromosomeBacteriaSequence into Chromosome:
each chromosome sequence are the same coding and noncoding DNASequence are convert into Gene and NcRNA and serialized sRNA are leaved unchanged Operons, terminator and other elements are serialized Annotation is created, saved in a table (only for verification) and serialized
run(String) - Static method in class bacnet.datamodel.sequenceNCBI.GenomeConversion: Method for Genome in the GenomeNCBIFolder

Convert a GenomeNCBI into a Genome object -> convert each ChromosomeBacteriaSequence into Chromosome:
each chromosome sequence are the same coding and noncoding DNASequence are convert into Gene and NcRNA and serialized sRNA are leaved unchanged Operons, terminator and other elements are serialized Annotation is created, saved in a table (only for verification) and serialized
run(String) - Static method in class bacnet.scripts.core.Rscript
run(String) - Static method in class bacnet.scripts.listeriomics.nterm.NTermStatProteolyse
run(String, boolean, double, String, String, boolean) - Static method in class bacnet.scripts.blast.MultiSequenceBlastProtein
run(String, double, String, String) - Static method in class bacnet.scripts.blast.MultiSequenceTBlastNProtein
run(String, String) - Static method in class bacnet.datamodel.proteomics.NTermCreateData
run(String, String) - Static method in class bacnet.scripts.listeriomics.nterm.NTermCreateFinalData: From the list created by Francis, update all Nterm peptides, indicating which type of TIS (translation initiation sites) they are: annotated TIS multiple TIS updated TIS internal TIS
run(String, String, String) - Static method in class bacnet.scripts.core.PredaTerm: Please enter fasta file as argument, with 800 nucleotides flanking the intergenic sequences") ;
run(IProgressMonitor) - Method in class bacnet.Database.InitDatabaseThread
run(IProgressMonitor) - Method in class bacnet.datamodel.sequence.Genome.GetMultiFastaThread
run(IProgressMonitor) - Method in class bacnet.datamodel.sequence.Genome.OpenGenomesThread
run(IProgressMonitor) - Method in class bacnet.expressionAtlas.core.OpenExpressionMatrixAndComparisons
run(IProgressMonitor) - Method in class bacnet.expressionAtlas.HeatMapMultiOmicsView.InitOmicsMatrixThread
run(IProgressMonitor) - Method in class bacnet.views.CoExprNetworkView.InitNetworkThread
run(EPartService) - Static method in class bacnet.scripts.phylogeny.PhylogenySmallORFs
runBlast(ArrayList<Srna>) - Static method in class bacnet.scripts.listeriomics.srna.Srna10403SOliver: Run Blast of all Srna found in Oliver et al study against EGD-e and full 10403S sequence
runCreation() - Static method in class bacnet.scripts.database.DatabaseCreation: Deprecated.

This method in an example of all methods which should be run to create your multi-omics website
It is never run !
runFigTree(String, String) - Static method in class bacnet.scripts.database.PhylogenomicsCreation: Run Tree figure construction
runJOLYTree(String, String, String) - Static method in class bacnet.scripts.database.PhylogenomicsCreation: Run Genomes alignment and tree reconstruciton with JolyTree https://gitlab.pasteur.fr/GIPhy/JolyTree
runPostInit() - Static method in class bacnet.scripts.listeriomics.GenomesListeriomics: Run all the methods concerning genomes in Listeriomics
Run after loading of Workbench!
runPostInit() - Static method in class bacnet.scripts.listeriomics.MainListeriomics: Run after loading of workbench (use when display are needed)
runPostInit() - Static method in class bacnet.scripts.listeriomics.SystemsBiologyListeriomics
runPostTest() - Static method in class bacnet.e4.rap.setup.Test: Run post--test after interface creation
runPostTests(EPartService) - Static method in class bacnet.e4.rap.TestPart: Ran after the ListeriomicsSample page has open
runPreTest() - Static method in class bacnet.e4.rap.setup.Test: Run pre-test methods before interface creation
runProcess(String) - Static method in class bacnet.utils.CMD: Run a process
runProcess(String[]) - Static method in class bacnet.utils.CMD
runProcess(String[], boolean, String) - Static method in class bacnet.utils.CMD: Run a process.
runProcess(String, boolean, String) - Static method in class bacnet.utils.CMD: Run a process.
runTests() - Static method in class bacnet.e4.rap.setup.SetupPart: Ran when the BannerView is opened
runTests() - Static method in class bacnet.e4.rap.TestPart: Ran when the BannerView is opened
RWTUtils - Class in bacnet.utils: Tools for saving files
Everything in bacnet.raprcp package is specific to eclipse.rap or eclipse.rcp.
RWTUtils() - Constructor for class bacnet.utils.RWTUtils

A B C D E F G H I J L M N O P Q R S T U V W X Y Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form