Index

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All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

W

WHITE - Static variable in class bacnet.utils.BasicColor

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.e4.rap.BannerView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.e4.rap.InitViewBacnet

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.e4.rap.InitViewListeria

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.e4.rap.InitViewListeriaSample

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.e4.rap.InitViewYersinia

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.e4.rap.setup.SetupPart

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.e4.rap.SynTView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.core.SelectGenomeElementDialog

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.HeatMapMultiOmicsView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.HeatMapProteomicsExpressionView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.HeatMapProteomicsView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.HeatMapTranscriptomicsView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.ProteomicsDataFilterComposite

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.ProteomicsExpressionView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.ProteomicsView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.TableCompositeHeatMap

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.TranscriptomicsDataFilterComposite

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.TranscriptomicsView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.genomeBrowser.dialog.AddProteomicsDataDialog

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.genomeBrowser.dialog.AddTranscriptomicsDataDialog

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.genomeBrowser.dialog.LegendDialog

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.genomeBrowser.NTerminomicsView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.genomeBrowser.tracksGUI.TracksComposite

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.sequenceTools.AnnotationView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.sequenceTools.GeneView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.sequenceTools.GenomicsView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.sequenceTools.SequenceDisplayDialog

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.sequenceTools.SrnaSummaryView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.sequenceTools.SrnaView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.table.gui.FilterDialog

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.table.gui.FilterExpressionMatrixDialog

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.table.gui.HideExpressionMatrixDialog

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.table.TableSWTComposite

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.views.BannerView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.views.CoExprNetworkView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.views.CRISPRPredictView

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.views.CRISPRPredictView2

widgetDefaultSelected(SelectionEvent) - Method in class bacnet.views.InitView

widgetSelected(SelectionEvent) - Method in class bacnet.e4.rap.BannerView

widgetSelected(SelectionEvent) - Method in class bacnet.e4.rap.InitViewBacnet

widgetSelected(SelectionEvent) - Method in class bacnet.e4.rap.InitViewListeria

widgetSelected(SelectionEvent) - Method in class bacnet.e4.rap.InitViewListeriaSample

widgetSelected(SelectionEvent) - Method in class bacnet.e4.rap.InitViewYersinia

widgetSelected(SelectionEvent) - Method in class bacnet.e4.rap.setup.SetupPart

widgetSelected(SelectionEvent) - Method in class bacnet.e4.rap.SynTView

widgetSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.core.SelectGenomeElementDialog

widgetSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.HeatMapMultiOmicsView

widgetSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.HeatMapProteomicsExpressionView

widgetSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.HeatMapProteomicsView

widgetSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.HeatMapTranscriptomicsView

widgetSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.ProteomicsDataFilterComposite

widgetSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.ProteomicsExpressionView

widgetSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.ProteomicsView

widgetSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.TableCompositeHeatMap

widgetSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.TranscriptomicsDataFilterComposite

widgetSelected(SelectionEvent) - Method in class bacnet.expressionAtlas.TranscriptomicsView

widgetSelected(SelectionEvent) - Method in class bacnet.genomeBrowser.dialog.AddProteomicsDataDialog

widgetSelected(SelectionEvent) - Method in class bacnet.genomeBrowser.dialog.AddTranscriptomicsDataDialog

widgetSelected(SelectionEvent) - Method in class bacnet.genomeBrowser.dialog.LegendDialog

widgetSelected(SelectionEvent) - Method in class bacnet.genomeBrowser.NTerminomicsView

widgetSelected(SelectionEvent) - Method in class bacnet.genomeBrowser.tracksGUI.TracksComposite

widgetSelected(SelectionEvent) - Method in class bacnet.sequenceTools.AnnotationView

widgetSelected(SelectionEvent) - Method in class bacnet.sequenceTools.GeneView

widgetSelected(SelectionEvent) - Method in class bacnet.sequenceTools.GenomicsView

widgetSelected(SelectionEvent) - Method in class bacnet.sequenceTools.SequenceDisplayDialog

widgetSelected(SelectionEvent) - Method in class bacnet.sequenceTools.SrnaSummaryView

widgetSelected(SelectionEvent) - Method in class bacnet.sequenceTools.SrnaView

widgetSelected(SelectionEvent) - Method in class bacnet.table.gui.FilterDialog

widgetSelected(SelectionEvent) - Method in class bacnet.table.gui.FilterExpressionMatrixDialog

widgetSelected(SelectionEvent) - Method in class bacnet.table.gui.HideExpressionMatrixDialog

widgetSelected(SelectionEvent) - Method in class bacnet.table.TableSWTComposite

widgetSelected(SelectionEvent) - Method in class bacnet.views.BannerView

widgetSelected(SelectionEvent) - Method in class bacnet.views.CoExprNetworkView

widgetSelected(SelectionEvent) - Method in class bacnet.views.CRISPRPredictView

widgetSelected(SelectionEvent) - Method in class bacnet.views.CRISPRPredictView2

widgetSelected(SelectionEvent) - Method in class bacnet.views.InitView

wildTypes - Static variable in class bacnet.datamodel.dataset.EGDeWTdata

List of wild types to use for creating EGDe_Mean

window(int, int) - Method in class org.biojava3.genome.parsers.gff.Location

Enable a "sliding window" iteration over a location to use with Java's "for" loop construct.

WindowedSequence<C extends Compound> - Class in org.biojava3.core.sequence.views

A sliding window view of a sequence which does not implement any interfaces like Sequence because they do not fit how this works.

WindowedSequence(Sequence<C>, int) - Constructor for class org.biojava3.core.sequence.views.WindowedSequence

wrap(Sequence<C>) - Method in enum org.biojava3.core.sequence.transcription.Frame

Optionally wraps a Sequence in a reverse complementing view (if the frame is on the reverse strand) and creates a sub sequence view if it is required.

write(OutputStream, LinkedHashMap<String, ChromosomeSequence>) - Method in class org.biojava3.genome.parsers.gff.GFF3Writer

Output gff3 format for a DNA Sequence

write(Appendable, Sequence<C>) - Static method in class org.biojava3.core.sequence.template.SequenceMixin

Used as a way of sending a Sequence to a writer without the cost of converting to a full length String and then writing the data out

write(FeatureList, String) - Static method in class org.biojava3.genome.parsers.gff.GeneIDGFF2Reader

Write features in FeatureList to file.

writeGeneSequence(File, Collection<GeneSequence>, boolean) - Static method in class org.biojava3.core.sequence.io.FastaWriterHelper

Write a collection of GeneSequences to a file where if the gene is negative strand it will flip and complement the sequence

writeGeneSequence(OutputStream, Collection<GeneSequence>, boolean) - Static method in class org.biojava3.core.sequence.io.FastaWriterHelper

Write a collection of GeneSequences to a file where if the gene is negative strand it will flip and complement the sequence

writeNucleotideSequence(File, Collection<DNASequence>) - Static method in class org.biojava3.core.sequence.io.FastaWriterHelper

Write a collection of NucleotideSequences to a file

writeNucleotideSequence(OutputStream, Collection<DNASequence>) - Static method in class org.biojava3.core.sequence.io.FastaWriterHelper

Write a collection of NucleotideSequences to a file

writeProteinSequence(File, Collection<ProteinSequence>) - Static method in class org.biojava3.core.sequence.io.FastaWriterHelper

Write collection of protein sequences to a file

writeProteinSequence(OutputStream, Collection<ProteinSequence>) - Static method in class org.biojava3.core.sequence.io.FastaWriterHelper

Write collection of protein sequences to a stream

writeSequence(File, Sequence<?>) - Static method in class org.biojava3.core.sequence.io.FastaWriterHelper

Write a sequence to a file

writeSequence(OutputStream, Sequence<?>) - Static method in class org.biojava3.core.sequence.io.FastaWriterHelper

Write a sequence to OutputStream

writeSequences(OutputStream, Collection<Sequence<?>>) - Static method in class org.biojava3.core.sequence.io.FastaWriterHelper

Method which will write your given Sequences to the specified OutputStream.

Wuerzburg - Class in bacnet.scripts.listeriomics.technology

Wuerzburg() - Constructor for class bacnet.scripts.listeriomics.technology.Wuerzburg

WUSTL - Class in bacnet.scripts.listeriomics.technology

WUSTL() - Constructor for class bacnet.scripts.listeriomics.technology.WUSTL

A B C D E F G H I J L M N O P Q R S T U V W X Y Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form