Package org.biojava3.core.sequence.views

package org.biojava3.core.sequence.views
  • Classes
    Class
    Description
    ComplementSequenceView<C extends ComplementCompound>
    For a given sequence this class will create a view over the top of it and for every request the code will return the complement of the underlying base e.g. base A will become base T
    ReversedSequenceView<C extends Compound>
    For a given sequence this class will return the base at the reversed position i.e. in a sequence of size 10, if you request base 2 you will get back the base at position 9.
    RnaSequenceView
    Attempts to do on the fly translation of RNA by not requesting the compounds until asked.
    WindowedSequence<C extends Compound>
    A sliding window view of a sequence which does not implement any interfaces like Sequence because they do not fit how this works.