Index

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All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

Q

qSequence - Variable in class bacnet.scripts.blast.BlastResult

qualityControlExtract() - Static method in class bacnet.scripts.core.normalization.GENormalization

Check temp folder, and GenExprComplete folder to see if some GeneExpression are not present in GeneExprComplete

qualityControlNorm() - Static method in class bacnet.scripts.core.normalization.GENormalization

Check temp folder, and GenExprComplete folder to see if some GeneExpression are not present in GeneExprComplete

qualityControlNorm(Experiment) - Static method in class bacnet.scripts.core.normalization.GRNormalization

Check temp folder, and GeneExprComplete folder to see if some GeneExpression are not present in GeneExprComplete

QualityFeature<S extends AbstractSequence<C>,C extends Compound> - Class in org.biojava3.core.sequence.features

DNA Sequences produced by modern sequencers usually have quality informaion attached to them.

QualityFeature(String, String) - Constructor for class org.biojava3.core.sequence.features.QualityFeature

quantiles(double[], int) - Static method in class bacnet.utils.VectorUtils

Return a list of quantiles
Example: quantiles(vector,10)[1] will calculate the 1d decile, the 1d of 10th quantile
Example: quantiles(vector,100)[5] will calculate the 5d centile, the 5th of 100th quantile = the 5% cut-off

QuantityFeature<S extends AbstractSequence<C>,C extends Compound> - Class in org.biojava3.core.sequence.features

It is common to have a numerical value or values associated with a feature.

QuantityFeature(String, String) - Constructor for class org.biojava3.core.sequence.features.QuantityFeature

QUERY - Enum constant in enum bacnet.scripts.blast.BlastOutput.BlastOutputTYPE

QUERY_SHOW - Enum constant in enum bacnet.scripts.blast.BlastOutput.BlastOutputTYPE

queryDef - Variable in class bacnet.scripts.blast.BlastResult

queryLength - Variable in class bacnet.scripts.blast.BlastResult

quickAddAnnotation(ExpressionMatrix, Genome) - Static method in class bacnet.datamodel.annotation.Annotation

Add annotation information to an ExpressionMatrix

A B C D E F G H I J L M N O P Q R S T U V W X Y Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form