Package org.biojava3.core.sequence.features

package org.biojava3.core.sequence.features

Related Packages

Package	Description
org.biojava3.core.sequence

Class	Description
AbstractFeature<S extends AbstractSequence<C>,C extends Compound>	A feature is currently any descriptive item that can be associated with a sequence position(s) A feature has a type and a source which is currently a string to allow flexibility for the user Ideally well defined features should have a class to describe attributes of that feature
DatabaseReferenceInterface	If a SequenceProxyReader implements this interface then that external source has a list of cross reference id(s)
DBReferenceInfo	If you have a uniprot ID then it is possible to get a collection of other id(s) that the protein is known by.
FeatureInterface<S extends AbstractSequence<C>,C extends Compound>	Interface class to handle describing arbitrary features.
FeaturesKeyWordInterface	Models the keywords that are annotated for a protein sequence at Uniprot.
QualityFeature<S extends AbstractSequence<C>,C extends Compound>	DNA Sequences produced by modern sequencers usually have quality informaion attached to them.
QuantityFeature<S extends AbstractSequence<C>,C extends Compound>	It is common to have a numerical value or values associated with a feature.
TextFeature<S extends AbstractSequence<C>,C extends Compound>	A implmentation of AbstractFeature