Package bacnet.scripts.listeriomics

Class TSSNTermRiboSeqListeriomics

java.lang.Object
bacnet.scripts.listeriomics.TSSNTermRiboSeqListeriomics
public class TSSNTermRiboSeqListeriomics extends Object
List of methods to process TSS, TermSeq, and RiboSeq of Listeriomics Some TSS and NTerm lists were provided in tab-delimited format. Some methods are provided here to construct .wig files
Author:
Christophe Bécavin

  • Field Details

    • PATH_TSSasRNA

      public static String PATH_TSSasRNA

    • PATH_TSS_EGDe

      public static String PATH_TSS_EGDe

    • PATH_TSS_Innocua

      public static String PATH_TSS_Innocua

    • TSS_HEADERS

      public static String[] TSS_HEADERS

    • TSS_Innocua_HEADERS

      public static String[] TSS_Innocua_HEADERS

    • PATH_TermSeq_EGDe

      public static String PATH_TermSeq_EGDe

    • TermSeq_HEADERS

      public static String[] TermSeq_HEADERS

  • Constructor Details

    • TSSNTermRiboSeqListeriomics

      public TSSNTermRiboSeqListeriomics()

  • Method Details

    • run

      public static void run()
      Run createListeriomicsTSSTermSeq() to construct wig files from tab-delimited files

    • processDanielRiboSeq

      public void processDanielRiboSeq()
      Process Daniel Dar TermSeq

    • createListeriomicsTSSTermSeq

      public static void createListeriomicsTSSTermSeq()
      Create TSS (Transcription Start Site) and TermSeq wig files
      Parameters:
      exp -

    • createASrnaTSStable

      public static void createASrnaTSStable()
      Run different function to curate the data given by Omri 15/11/2012