Package bacnet.scripts.listeriomics.nterm
package bacnet.scripts.listeriomics.nterm
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ClassDescriptionRun different method to compare iTIS position (internal translation) to data of Ribosome profiling in Bacillus and Ecoli:
compare the gene by BlastN find internal translation in the ribosome profiling find internal SD sequenceGenertal class for creation of NTerminomics tablesGeneral method for running all methods related to NTerm projectList of method to do statistics about common features in N-Terminus of genes: - start codon - SD binding - AU proportion - Folding energyA list of methods to assess the quantity of proteolysis on the peptidesMethods to look at overlapping elements between NCBI and RAST genomes