Uses of Package
org.biojava3.core.sequence.template

Packages that use org.biojava3.core.sequence.template

Package	Description
bacnet.datamodel.sequence
bacnet.reader
org.biojava3.core.sequence
org.biojava3.core.sequence.compound
org.biojava3.core.sequence.edits
org.biojava3.core.sequence.features
org.biojava3.core.sequence.io
org.biojava3.core.sequence.io.template
org.biojava3.core.sequence.io.util
org.biojava3.core.sequence.loader
org.biojava3.core.sequence.location
org.biojava3.core.sequence.location.template
org.biojava3.core.sequence.storage
org.biojava3.core.sequence.template
org.biojava3.core.sequence.transcription
org.biojava3.core.sequence.views
org.biojava3.core.util

Classes in org.biojava3.core.sequence.template used by bacnet.datamodel.sequence

Class	Description
AbstractSequence	The base class for DNA, RNA and Protein sequences.
Accessioned	Indicates an entity is accessioned
CompoundSet
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes
SequenceReader

Classes in org.biojava3.core.sequence.template used by bacnet.reader

Class	Description
AbstractSequence	The base class for DNA, RNA and Protein sequences.
Compound
CompoundSet
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence

Class	Description
AbstractSequence	The base class for DNA, RNA and Protein sequences.
Accessioned	Indicates an entity is accessioned
Compound
CompoundSet
LightweightProfile	Defines a minimal data structure for reading and writing a sequence alignment.
LightweightProfile.StringFormat	List of output formats.
ProxySequenceReader
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes
SequenceReader
SequenceView

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.compound

Class	Description
AbstractCompound	The details of a Compound
AbstractCompoundSet
AbstractNucleotideCompoundSet
ComplementCompound
Compound
CompoundSet
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.edits

Class	Description
Compound
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.features

Class	Description
AbstractSequence	The base class for DNA, RNA and Protein sequences.
Compound

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.io

Class	Description
AbstractSequence	The base class for DNA, RNA and Protein sequences.
Compound
CompoundSet
ProxySequenceReader
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.io.template

Class	Description
AbstractSequence	The base class for DNA, RNA and Protein sequences.
Compound
ProxySequenceReader
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.io.util

Class	Description
Compound
CompoundSet
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.loader

Class	Description
Accessioned	Indicates an entity is accessioned
Compound
CompoundSet
ProxySequenceReader
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes
SequenceReader
SequenceView

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.location

Class	Description
AbstractSequence	The base class for DNA, RNA and Protein sequences.
Accessioned	Indicates an entity is accessioned
Compound

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.location.template

Class	Description
Accessioned	Indicates an entity is accessioned
Compound
ProxySequenceReader
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.storage

Class	Description
Accessioned	Indicates an entity is accessioned
Compound
CompoundSet
ProxySequenceReader
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes
SequenceReader
SequenceView

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.template

Class	Description
AbstractCompoundSet
AbstractSequence	The base class for DNA, RNA and Protein sequences.
AbstractSequence.AnnotationType
Accessioned	Indicates an entity is accessioned
ComplementCompound
Compound
CompoundSet
CompoundTranslator
LightweightProfile.StringFormat	List of output formats.
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes
SequenceReader
SequenceView

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.transcription

Class	Description
AbstractCompoundTranslator
Compound
CompoundSet
CompoundTranslator
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.views

Class	Description
Accessioned	Indicates an entity is accessioned
ComplementCompound
Compound
CompoundSet
ProxySequenceReader
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes
SequenceProxyView
SequenceReader
SequenceView

Classes in org.biojava3.core.sequence.template used by org.biojava3.core.util

Class	Description
Sequence	Main interface for defining a collection of Compounds and accessing them using biological indexes