Package org.biojava3.core.sequence.template

Interface SequenceView<C extends Compound>

All Superinterfaces:

Accessioned, Iterable<C>, Sequence<C>

All Known Implementing Classes:

ComplementSequenceView, ReversedSequenceView, RnaSequenceView, SequenceProxyView

public interface SequenceView<C extends Compound>
extends Sequence<C>

Method Summary

Modifier and Type	Method	Description
Integer	getBioEnd()	1-indexed, inclusive.
Integer	getBioStart()	1-indexed, inclusive.
Sequence<C>	getViewedSequence()

Methods inherited from interface org.biojava3.core.sequence.template.Accessioned

getAccession

Methods inherited from interface java.lang.Iterable

forEach, iterator, spliterator

Methods inherited from interface org.biojava3.core.sequence.template.Sequence

countCompounds, getAsList, getCompoundAt, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSequenceAsString, getSubSequence

Method Details

getViewedSequence

Sequence<C> getViewedSequence()

getBioStart

Integer getBioStart()

1-indexed, inclusive.

getBioEnd

Integer getBioEnd()

1-indexed, inclusive.