SequenceReader

All Superinterfaces:: Accessioned, Iterable<C>, Sequence<C>

All Known Subinterfaces:: ProxySequenceReader<C>

All Known Implementing Classes:: ArrayListProxySequenceReader, ArrayListSequenceReader, BitSequenceReader, FourBitSequenceReader, JoiningSequenceReader, RnaSequenceView, SequenceFileProxyLoader, SingleCompoundSequenceReader, StringProxySequenceReader, TwoBitSequenceReader, UniprotProxySequenceReader

public interface SequenceReader<C extends Compound> extends Sequence<C>

Method Summary

Modifier and Type

Method

Description

void

setCompoundSet(CompoundSet<C> compoundSet)

void

setContents(String sequence)

Methods inherited from interface org.biojava3.core.sequence.template.Accessioned
getAccession

Methods inherited from interface java.lang.Iterable
forEach, iterator, spliterator

Methods inherited from interface org.biojava3.core.sequence.template.Sequence
countCompounds, getAsList, getCompoundAt, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSequenceAsString, getSubSequence

Method Details
- setCompoundSet
  
  void setCompoundSet(CompoundSet<C> compoundSet)
- setContents
  
  void setContents(String sequence)