Package org.biojava3.core.sequence.template

Class AbstractCompoundTranslator<F extends Compound,T extends Compound>

java.lang.Object

org.biojava3.core.sequence.template.AbstractCompoundTranslator<F,T>

All Implemented Interfaces:

CompoundTranslator<F,T>

Direct Known Subclasses:

DNAToRNATranslator, RNAToAminoAcidTranslator

public abstract class AbstractCompoundTranslator<F extends Compound,T extends Compound>
extends Object
implements CompoundTranslator<F,T>

Constructor Summary

Constructors

Constructor	Description
AbstractCompoundTranslator(SequenceCreatorInterface<T> creator, CompoundSet<F> fromCompoundSet, CompoundSet<T> toCompoundSet)

Method Summary

Modifier and Type	Method	Description
Sequence<T>	createSequence(Sequence<F> originalSequence)
List<Sequence<T>>	createSequences(Sequence<F> originalSequence)
SequenceCreatorInterface<T>	getCreator()
CompoundSet<F>	getFromCompoundSet()
CompoundSet<T>	getToCompoundSet()
T	translate(F fromCompound)
List<T>	translateMany(F fromCompound)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AbstractCompoundTranslator

public AbstractCompoundTranslator(SequenceCreatorInterface<T> creator,
 CompoundSet<F> fromCompoundSet,
 CompoundSet<T> toCompoundSet)

Method Details

getCreator

public SequenceCreatorInterface<T> getCreator()

getFromCompoundSet

public CompoundSet<F> getFromCompoundSet()

getToCompoundSet

public CompoundSet<T> getToCompoundSet()

translateMany

public List<T> translateMany(F fromCompound)

Specified by:

translateMany in interface CompoundTranslator<F extends Compound,T extends Compound>

translate

public T translate(F fromCompound)

Specified by:

translate in interface CompoundTranslator<F extends Compound,T extends Compound>

createSequences

public List<Sequence<T>> createSequences(Sequence<F> originalSequence)

Specified by:

createSequences in interface CompoundTranslator<F extends Compound,T extends Compound>

createSequence

public Sequence<T> createSequence(Sequence<F> originalSequence)

Specified by:

createSequence in interface CompoundTranslator<F extends Compound,T extends Compound>