Package org.biojava3.core.sequence.location

Class SequenceLocation<S extends AbstractSequence<C>,C extends Compound>

java.lang.Object

org.biojava3.core.sequence.location.template.AbstractLocation

org.biojava3.core.sequence.location.SimpleLocation

org.biojava3.core.sequence.location.SequenceLocation<S,C>

All Implemented Interfaces:

Iterable<Location>, Location, Accessioned

public class SequenceLocation<S extends AbstractSequence<C>,C extends Compound>
extends SimpleLocation

A location in a sequence that keeps a reference to its parent sequence

Author:

Scooter Willis

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava3.core.sequence.location.template.Location

Location.Tools

Field Summary

Fields inherited from interface org.biojava3.core.sequence.location.template.Location

EMPTY

Constructor Summary

Constructors

Constructor	Description
SequenceLocation(int start, int end, S sequence)

Method Summary

Modifier and Type	Method	Description
S	getSequence()

Methods inherited from class org.biojava3.core.sequence.location.template.AbstractLocation

equals, getAccession, getEnd, getLength, getRelevantSubLocations, getRelevantSubSequence, getStart, getStrand, getSubLocations, getSubSequence, hashCode, isBetweenCompounds, isCircular, isComplex, iterator, toString

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Constructor Details

SequenceLocation

public SequenceLocation(int start,
 int end,
 S sequence)

Method Details

getSequence

public S getSequence()

Returns:

the sequence