Uses of Package
org.biojava3.core.sequence
Package
Description
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ClassDescriptionA ChromosomeSequence is a DNASequence but keeps track of geneSequencesThis is class should model the attributes associated with a DNA sequence
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ClassDescriptionThis is class should model the attributes associated with a DNA sequence
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ClassDescriptionProvides a way of representing the strand of a sequence, location hit or feature.
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ClassDescriptionProvides a way of representing the strand of a sequence, location hit or feature.
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ClassDescriptionUsed in Sequences as the unique indentifier.Represents a exon or coding sequence in a gene.A ChromosomeSequence is a DNASequence but keeps track of geneSequencesGenBank gi|gi-number|gb|accession|locus ENA Data Library gi|gi-number|emb|accession|locus DDBJ, DNA Database of Japan gi|gi-number|dbj|accession|locus NBRF PIR pir||entry Protein Research Foundation prf||name SWISS-PROT UNIPROT sp|accession|name Brookhaven Protein Data Bank (1) pdb|entry|chain Brookhaven Protein Data Bank (2) entry:chain|PDBID|CHAIN|SEQUENCE Patents pat|country|number GenInfo Backbone Id bbs|number General database identifier gnl|database|identifier NCBI Reference Sequence ref|accession|locus Local Sequence identifier lcl|identifierThis is class should model the attributes associated with a DNA sequenceThe type of DNA sequenceA gene contains a collection of Exon sequencesThe representation of a ProteinSequenceRNASequence where RNACompoundSet are the allowed valuesUsed to map the start codon feature on a geneUsed to map the stop codon sequence on a geneProvides a way of representing the strand of a sequence, location hit or feature.This is the sequence if you want to go from a gene sequence to a protein sequence.
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ClassDescriptionThis is class should model the attributes associated with a DNA sequenceThe representation of a ProteinSequence
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ClassDescriptionUsed in Sequences as the unique indentifier.Provides a way of representing the strand of a sequence, location hit or feature.
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ClassDescriptionUsed in Sequences as the unique indentifier.GenBank gi|gi-number|gb|accession|locus ENA Data Library gi|gi-number|emb|accession|locus DDBJ, DNA Database of Japan gi|gi-number|dbj|accession|locus NBRF PIR pir||entry Protein Research Foundation prf||name SWISS-PROT UNIPROT sp|accession|name Brookhaven Protein Data Bank (1) pdb|entry|chain Brookhaven Protein Data Bank (2) entry:chain|PDBID|CHAIN|SEQUENCE Patents pat|country|number GenInfo Backbone Id bbs|number General database identifier gnl|database|identifier NCBI Reference Sequence ref|accession|locus Local Sequence identifier lcl|identifierProvides a way of representing the strand of a sequence, location hit or feature.
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ClassDescriptionUsed in Sequences as the unique indentifier.Provides a way of representing the strand of a sequence, location hit or feature.
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ClassDescriptionUsed in Sequences as the unique indentifier.Provides a way of representing the strand of a sequence, location hit or feature.
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ClassDescriptionUsed in Sequences as the unique indentifier.Provides a way of representing the strand of a sequence, location hit or feature.A sequence can be associated with a species or Taxonomy ID
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ClassDescriptionA ChromosomeSequence is a DNASequence but keeps track of geneSequencesThis is class should model the attributes associated with a DNA sequenceThe representation of a ProteinSequence
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ClassDescriptionThis is class should model the attributes associated with a DNA sequenceThe representation of a ProteinSequence
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ClassDescriptionA ChromosomeSequence is a DNASequence but keeps track of geneSequencesThis is class should model the attributes associated with a DNA sequence