Package bacnet.datamodel.sequenceNCBI

Class GenomeConversionElement

java.lang.Object
bacnet.datamodel.sequenceNCBI.GenomeConversionElement
public class GenomeConversionElement extends Object

  • Constructor Details

    • GenomeConversionElement

      public GenomeConversionElement()

  • Method Details

    • convertDNASequenceGeneral

      public static Sequence convertDNASequenceGeneral(DNASequence dnaSeq)
      From a DNASequence object, create Sequence
      Mainly used in GenomeConversion methods
      Parameters:
      dnaSeq -
      Returns:

    • convertDNASequenceGene

      public static Gene convertDNASequenceGene(DNASequence dnaSeq)
      From a DNASequence make a Gene object
      Parameters:
      dnaSeq -
      Returns:

    • convertDNASequenceNcRNA

      public static NcRNA convertDNASequenceNcRNA(DNASequence dnaSeq)
      From a DNASequence make a Gene object
      Parameters:
      dnaSeq -
      Returns:

    • convertDNASequenceOperon

      public static Operon convertDNASequenceOperon(String[] row, GenomeNCBI genome)

    • getEgdeOperonList

      public static ArrayList<Operon> getEgdeOperonList() throws Exception
      Throws:
      Exception

    • getEgdeOperonMap

      public static TreeMap<String,Operon> getEgdeOperonMap() throws Exception
      Throws:
      Exception

    • getGeneToOperon

      public static void getGeneToOperon()