LocusTag

java.lang.Object

bacnet.datamodel.annotation.LocusTag

public class LocusTag extends Object

Since the update of RefSeq database all the locustag have been changed
Here is some methods to deal with this change

Author:: cbecavin

Field Summary

Fields

Modifier and Type

Field

Description

static String

NewLocusTagArray

static String

OldLocusTagArray
Constructor Summary

Constructors

Constructor

Description

LocusTag()
Method Summary

Modifier and Type

Method

Description

static void

addLocusChange()

static void

parseNewLocusTagChange()

Create a HashMap with all "old_locus_tag" and "locus_tag" from the new GFF folder Listeriomics/NCBIGenomesNew/

static void

parseOldLocusTagChange()

Create a HashMap with all "old_locus_tag" and "locus_tag" from the current GFF folder Listeriomics/NCBIGenomes/

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- NewLocusTagArray
  
  public static String NewLocusTagArray
- OldLocusTagArray
  
  public static String OldLocusTagArray
Constructor Details
- LocusTag
  
  public LocusTag()
Method Details
- addLocusChange
  
  public static void addLocusChange()
- parseOldLocusTagChange
  
  public static void parseOldLocusTagChange()
  
  Create a HashMap with all "old_locus_tag" and "locus_tag" from the current GFF folder Listeriomics/NCBIGenomes/
- parseNewLocusTagChange
  
  public static void parseNewLocusTagChange()
  
  Create a HashMap with all "old_locus_tag" and "locus_tag" from the new GFF folder Listeriomics/NCBIGenomesNew/